Gauss-Manin connection
Anchor (Master): Manin 1958 *Rational points of algebraic curves over function fields* (originator); Katz-Oda 1968 *On the differentiation of de Rham cohomology classes with respect to parameters* (modern algebraic framework); Griffiths 1968 *Periods of integrals on algebraic manifolds I-III* (Hodge-theoretic interpretation); Voisin *Hodge Theory and Complex Algebraic Geometry* I+II §10; Cattani-Kaplan-Schmid 1986 (degenerations); Cox-Katz *Mirror Symmetry and Algebraic Geometry*
Intuition [Beginner]
Take a family of compact Riemann surfaces, parameterised by a small disc: one surface for each parameter value, each varying smoothly with the parameter. On every surface in the family the first cohomology has the same dimension , where is the common genus. Stacking these cohomology spaces over the parameter disc gives a vector bundle whose fibres are the cohomology of the surfaces — the cohomology bundle of the family.
The Gauss-Manin connection is the rule that says how to transport a cohomology class along a path in the parameter space. Pick a closed loop in one fibre, deform it continuously through the family to a closed loop in a nearby fibre, and the integral of any cohomology class against that deformed loop gives the value at the new parameter. This transport is flat: integration along two homotopic paths gives the same answer. Flatness is what lets you call the bundle locally constant — not constant in the sense of one fixed vector space, but constant up to a unique identification along every short path.
The Gauss-Manin connection turns the moving cohomology bundle into a single coherent object. It is the engine behind period integrals, the differential equations they satisfy, the variation of Hodge structure on a moduli space, and the modern dictionary between Calabi-Yau families and quantum cohomology.
Visual [Beginner]
A schematic of a one-parameter family of Riemann surfaces for in a base disc , with a horizontal cylinder along the base illustrating the family and small ovals representing fibres. A loop on the central fibre is parallel-transported to loops on neighbouring fibres along the base; an arrow labelled "Gauss-Manin connection" tracks the transport, while a second arrow integrates a holomorphic 1-form against the loop to produce the period , the path-integral of around .
Worked example [Beginner]
Take the Legendre family of elliptic curves: for each complex number different from and , the curve is the smooth projective completion of the equation . Each is a compact Riemann surface of genus , with cohomology bundle of fibre dimension .
A natural holomorphic 1-form on is . Pick a loop in a reference fibre encircling the segment from to on the -line. Parallel-transport gives a continuously-deforming family of loops in for nearby .
The period of along the deformed loop , written , is the path-integral of around . After deforming the loop down to the real interval from to , this period is the complete elliptic integral of the first kind: a classical function studied since the 18th century. As a function of , it satisfies the Gauss hypergeometric equation
This is the Picard-Fuchs equation of the family, and its two linearly-independent solutions are exactly the periods of over the two loops generating the homology of .
What this tells us: the Gauss-Manin connection on the rank- cohomology bundle of the Legendre family is encoded by a single second-order ODE on . The cohomology moves as varies, and the law of motion is a classical hypergeometric ODE Gauss already studied in 1812.
Check your understanding [Beginner]
Formal definition [Intermediate+]
Let be a smooth proper morphism of complex manifolds (or a smooth proper morphism of schemes over a field of characteristic zero), with smooth and connected. Each fibre is a compact Kähler manifold of fixed diffeomorphism type. The cohomology bundle in degree is $$ \mathcal{H}^k := R^k \pi_* \mathbb{C}_{\mathcal{X}}, $$ a local system of finite-rank complex vector spaces on with fibre . Equivalently, is a holomorphic vector bundle on together with a flat -linear connection.
Definition (Gauss-Manin connection). The Gauss-Manin connection in degree is the canonical flat connection $$ \nabla : \mathcal{H}^k \to \mathcal{H}^k \otimes_{\mathcal{O}S} \Omega^1_S $$ *on the cohomology bundle, characterised by the property that for every locally-constant section of the underlying local system, . A section is parallel along a path in from to if and only if $\sigma(s_1) \in H^k(X{s_1}; \mathbb{C})\sigma(s_0) \in H^k(X_{s_0}; \mathbb{C})k\gamma$.*
Equivalent formulations.
- Topological / Riemann-Hilbert. The local system corresponds under the Riemann-Hilbert correspondence to a flat vector bundle on . The Gauss-Manin connection is precisely this flat structure.
- Algebraic (Katz-Oda 1968). The relative de Rham cohomology is a coherent locally free -module. The filtration of by powers of , produces a spectral sequence whose first connecting morphism on for is the Gauss-Manin connection .
- Čech-cocycle level. Choose a Čech open cover of trivialising . A Čech cohomology class on has local representatives in on intersections; lifting to and applying the absolute differential produces a cocycle in whose cohomology class is independent of the lift. This class is .
Period mapping. Fix a reference fibre and a homology basis for . For a holomorphic section given by a relative de Rham class with local representatives , parallel transport produces local-system-trivialisations on simply-connected open subsets of , and the periods are $$ \Pi_i(s) := \int_{\gamma_i(s)} \omega_s. $$ The functions are multivalued holomorphic on — the multivaluation is the monodromy representation of the local system.
Picard-Fuchs equations. Pick an algebraic relation among in the rank- bundle . Such a relation is a linear ODE with algebraic coefficients on — the Picard-Fuchs equation of the section . Its solution space is spanned by the periods . The singularities of the ODE lie at the discriminant locus of (where the family degenerates) and are regular singularities in the sense of Fuchs (Griffiths 1968).
Variation of Hodge structure (VHS). Each fibre cohomology carries a Hodge filtration depending holomorphically on . The collection is a holomorphic subbundle. Griffiths transversality asserts $$ \nabla F^p \mathcal{H}^k \subseteq F^{p - 1} \mathcal{H}^k \otimes \Omega^1_S, $$ a substantive first-order differential constraint coupling the Hodge filtration to the Gauss-Manin connection. Griffiths transversality is the differential-geometric content of variation of Hodge structure.
Counterexamples to common slips.
- The Hodge filtration is not a sub-local-system: in general, and the failure (down by exactly one step) is Griffiths transversality.
- Periods are multivalued. Fixing a global single-valued branch is equivalent to lifting to its universal cover; on itself the periods are sections of a local system, not honest functions.
- The cohomology bundle is locally constant as a local system but the underlying holomorphic bundle has a Hodge filtration that genuinely varies with . Local constancy refers to the flat -structure, not to the holomorphic structure on the Hodge subbundles.
Key theorem with proof [Intermediate+]
Theorem (Katz-Oda 1968 / Griffiths 1968, existence and flatness of the Gauss-Manin connection). Let be a smooth proper morphism of complex manifolds with smooth and connected. Then there exists a unique -linear flat connection $$ \nabla : R^k \pi_* \Omega^\bullet_{\mathcal{X}/S} \to R^k \pi_* \Omega^\bullet_{\mathcal{X}/S} \otimes_{\mathcal{O}S} \Omega^1_S $$ *on the relative de Rham cohomology bundle, such that the horizontal sections are exactly the locally-constant sections of the topological local system $R^k \pi* \mathbb{C}_{\mathcal{X}}\nabla\mathcal{X}/S$ and compatible with the Hodge filtration via Griffiths transversality.*
Proof. The argument has four steps: construct via the Katz-Oda filtration, verify flatness , identify horizontal sections with the topological local system via the holomorphic Poincaré lemma, and derive Griffiths transversality from the bidegree count.
Step 1 — construction via filtration. Filter the absolute de Rham complex by $$ \mathrm{Fil}^p \Omega^\bullet_{\mathcal{X}} := \mathrm{image}\bigl(\pi^* \Omega^p_S \otimes_{\mathcal{O}{\mathcal{X}}} \Omega^{\bullet - p}{\mathcal{X}/S} \to \Omega^\bullet_{\mathcal{X}}\bigr). $$ The associated graded is . Apply . The resulting spectral sequence has , and the differential is a -linear map $$ \nabla : R^k \pi_* \Omega^\bullet_{\mathcal{X}/S} \to R^k \pi_* \Omega^\bullet_{\mathcal{X}/S} \otimes_{\mathcal{O}_S} \Omega^1_S $$ satisfying the Leibniz rule for — this is the verification that is a connection rather than an -linear morphism (the Leibniz failure of -linearity comes from the piece of the differential on acting on ). Define to be this .
Step 2 — flatness. The composition corresponds in the spectral sequence to the composition . Since the spectral sequence comes from a filtered complex with , the differential satisfies at the -page, so . The Gauss-Manin connection is flat.
Step 3 — horizontal sections match the topological local system. The holomorphic Poincaré lemma, applied to the relative de Rham complex, gives a quasi-isomorphism on and on each fibre. Applying to the absolute resolution gives , and the filtration above identifies this with at the -page (since is filtered by relative versus absolute degree, and the spectral sequence degenerates at for smooth proper in characteristic zero, by the Hodge-to-de-Rham degeneration combined with the relative version of GAGA). The horizontal sections of correspond under this identification to the locally-constant sections of — that is, to the topological local system. Functoriality follows from naturality of the Katz-Oda filtration.
Step 4 — Griffiths transversality. The Hodge filtration is induced by the stupid filtration of the relative de Rham complex. Differentiation in a base direction acts on a class represented by a relative form of pure type by lifting to and applying ; the result lies in . After projection onto and the Hodge-filtration step, the result lies in but not in in general — the relative differential projects out under the spectral sequence. The bidegree count forces , which is Griffiths transversality.
The four-step structure is faithful to Katz-Oda 1968 §3 and Voisin §10 [Voisin Hodge Theory I]; Griffiths 1968 frames the same content via the period mapping and reads transversality off the horizontality of the period domain.
Bridge. The Gauss-Manin connection proven here is the flat structure that organises the moving cohomology in a family of compact Kähler manifolds, and the four-step proof exhibits it on the relative de Rham complex via the Katz-Oda spectral sequence. For families of compact Riemann surfaces over a base , the relevant case is : the rank- cohomology bundle has Hodge filtration with quotient , both of rank by 06.04.03 Hodge decomposition; Serre duality on each fibre 06.04.04 gives the perfect pairing that promotes the Hodge filtration to a polarised structure varying holomorphically over . Griffiths transversality becomes the differential-geometric content of the period mapping into the Siegel upper half space — the second-fundamental-form term of the variation of Hodge structure. Combined with the period integrals against locally-constant cycles, the Gauss-Manin connection produces the Picard-Fuchs equation governing those periods, and that ODE is the algebraic shadow of the entire transcendental structure of the family. Putting these together, the foundational insight is that the topological invariance of fibre cohomology promotes to a flat connection on a holomorphic bundle whose Hodge structure varies with the parameter, and that the bridge between this transcendental fact and computable algebra is the Picard-Fuchs equation.
Exercises [Intermediate+]
Lean formalization [Intermediate+]
Mathlib does not currently formalise the Gauss-Manin connection on the relative de Rham cohomology of a smooth proper morphism, the Katz-Oda spectral-sequence construction, the local-system structure on , the Hodge filtration on the cohomology bundle, or Griffiths transversality. A proposed signature, in Lean 4 / Mathlib syntax, sketching the target statement:
[object Promise]The proof depends on names that do not currently exist in Mathlib (the relative de Rham complex of a smooth proper morphism, the Katz-Oda construction of the Gauss-Manin connection via the spectral sequence of a filtered complex, the holomorphic Poincaré lemma, the Hodge filtration on the cohomology bundle, Griffiths transversality). Each is a candidate Mathlib contribution; until then this unit ships with lean_status: none.
Advanced results [Master]
The Gauss-Manin connection is the canonical flat structure on the cohomology bundle of any smooth proper morphism, and the dimension-one fibre case treated above is the core curve setting; the theory generalises in three directions, each with its own structural theorems.
Variation of Hodge structure (Griffiths 1968-70). For a polarised variation of Hodge structure of weight on a smooth base , Griffiths transversality promotes to the infinitesimal period relations: the period mapping to the period domain is a horizontal holomorphic mapping, and conversely every horizontal holomorphic mapping into comes from a variation of Hodge structure. The period domain is a complex homogeneous space with a -invariant horizontal distribution; the horizontal tangent bundle is integrable only on the Hermitian symmetric sub-domains, which classifies the cases (Shimura varieties, Hermitian-symmetric VHS) where the period mapping is unobstructed.
Degeneration and limit mixed Hodge structure (Cattani-Kaplan-Schmid 1986). When the family extends to a degeneration over a divisor at infinity with normal-crossings boundary, the Gauss-Manin connection has regular singularities along , and the residue of along each component of acts unipotently on the local-system fibre (the monodromy theorem, due to Borel). The limit mixed Hodge structure of Schmid 1973 / Cattani-Kaplan-Schmid 1986 [Cattani-Kaplan-Schmid 1986] is the canonical mixed Hodge structure on the nearby fibre, controlling the asymptotic behaviour of periods near via the nilpotent-orbit theorem and the SL-orbit theorem. The asymptotic period as in a one-parameter degeneration is governed by the unipotent monodromy and the limit Hodge filtration.
Mirror symmetry and quantum cohomology (Givental-Kontsevich). For the Calabi-Yau quintic threefold as varies in , the Picard-Fuchs equation of the holomorphic 3-form over a vanishing cycle is the quintic Picard-Fuchs equation (Candelas-de la Ossa-Green-Parkes 1991 [Candelas-de la Ossa-Green-Parkes 1991]): a fourth-order ODE $$ \bigl[\theta^4 - 5 \psi \cdot (5 \theta + 1)(5 \theta + 2)(5 \theta + 3)(5 \theta + 4)\bigr] f = 0, \qquad \theta = \psi , d/d\psi. $$ The mirror conjecture, in Givental's and Kontsevich's formulations [Cox-Katz Mirror Symmetry], identifies the Gauss-Manin connection on the rank- middle cohomology bundle of the family of with the quantum cohomology connection of the mirror Calabi-Yau threefold . The mirror-side quantum cohomology connection encodes Gromov-Witten invariants — counts of holomorphic curves in — and the identification with the Gauss-Manin connection of recovers Gromov-Witten invariants from period integrals. The mirror map converts the algebraic Picard-Fuchs solution to the canonical coordinate on the quantum side. Givental's theorem (1996) and the Lian-Liu-Yau / Givental proofs of the mirror conjecture are precise statements about the Gauss-Manin connection on the quintic family.
-adic and arithmetic Gauss-Manin (Katz, Faltings, Berthelot-Ogus). For a smooth proper morphism over a -adic ring of integers, the Katz-Oda construction produces an algebraic Gauss-Manin connection on the relative algebraic de Rham cohomology; the Berthelot-Ogus comparison theorem (1978) and Faltings's -adic Hodge theory (1987-88) compare this connection with the Frobenius isocrystal on crystalline cohomology, identifying horizontal sections with Frobenius-fixed vectors and providing the -adic analogue of monodromy. The framework underlies Kim-Faltings non-abelian -adic Hodge theory and the Tate-Sen-Fontaine theory of -adic Galois representations.
Frobenius manifolds (Dubrovin 1996). A Frobenius manifold is a complex manifold together with a flat metric, a commutative associative product on each tangent space depending on the point, and compatibility axioms (potentiality, scaling). Dubrovin's framework makes the Gauss-Manin connection on the cohomology of a family the central structural object: the connection on is twisted by the multiplication, and the resulting flat second structure recovers the WDVV equations. Frobenius manifolds arise from Calabi-Yau Gauss-Manin (B-side mirror symmetry), from quantum cohomology of a Fano variety (A-side), and from Saito's primitive form theory on isolated hypersurface singularities; the unifying claim is that all three carry the same structure.
Shimura varieties. The Gauss-Manin connection on the universal abelian-variety family over a Shimura variety governs the de Rham realisation of the corresponding automorphic local system. The combination of Gauss-Manin with the action of the Hecke algebra on cohomology produces the automorphic comparison, which is the bridge from arithmetic geometry to automorphic forms via Deligne's Langlands-Kottwitz reciprocity programme.
Synthesis. The Gauss-Manin connection turns the cohomology of a family of compact Kähler manifolds into a flat holomorphic bundle whose Hodge filtration varies holomorphically and whose periods satisfy algebraic ODEs. Read in the curve case, the bundle is rank with Hodge subbundle of rank , the connection encodes the variation of the period matrix on the moduli of curves, and Griffiths transversality is the differential-geometric content of the period mapping into the Siegel upper half space. Read in the Calabi-Yau case, the connection encodes the Picard-Fuchs equation whose solutions count holomorphic curves on the mirror manifold via the mirror map. Read in the arithmetic case, the connection becomes the de Rham realisation of a Galois representation, and horizontal sections are Frobenius eigenvectors. Read in the Frobenius-manifold case, the connection is the structural input for the WDVV equations governing genus-zero Gromov-Witten theory, primitive forms, and integrable hierarchies. Putting these together, the cohomology of every smooth proper family of varieties over a base comes equipped with a single canonical flat connection whose properties — flatness, Griffiths transversality, regular-singular monodromy, -adic Frobenius compatibility — are the exact data needed to translate transcendental period geometry into algebraic differential equations and arithmetic Galois representations; the dimension-one curve case generalises to the variation-of-Hodge-structure framework that organises the cohomology of every smooth proper family.
Full proof set [Master]
Lemma (relative holomorphic Poincaré lemma). Let be a smooth morphism of complex manifolds. Then the natural map is a quasi-isomorphism, and consequently $R^k \pi_ \Omega^\bullet_{\mathcal{X}/S}$ computes the topological cohomology of fibres in the proper case.*
Proof. Locally on the morphism is a projection in suitable coordinates, with generated by differentials of the fibre coordinates. The relative de Rham complex is then the tensor product of with the absolute de Rham complex of the fibre, and the holomorphic Poincaré lemma on the polydisc gives exactness in degrees and . The properness assumption gives finite-dimensional via Grauert's theorem, and the spectral-sequence comparison yields at the topological level.
Lemma (Katz-Oda construction). For smooth proper of complex manifolds, the filtration $\mathrm{Fil}^p \Omega^\bullet_{\mathcal{X}} = \pi^ \Omega^p_S \otimes \Omega^{\bullet - p}{\mathcal{X}/S}E_1^{p, q} = \Omega^p_S \otimes{\mathcal{O}S} R^q \pi* \Omega^\bullet_{\mathcal{X}/S}d_1 : E_1^{0, k} \to E_1^{1, k}\mathbb{C}\nablaR^k \pi_* \Omega^\bullet_{\mathcal{X}/S}$ satisfying the Leibniz rule.*
Proof. The filtration is a decreasing filtration of by sub-complexes, and as a complex with differential induced from . Apply and use the projection formula for : . Hence . The differential on is induced by the connecting morphism of the short exact sequence in the derived category. For this gives . The Leibniz rule for holds because the absolute differential acts on by , and projects to in the -page.
Lemma (Griffiths transversality). Under the same hypotheses, the Gauss-Manin connection satisfies , where $F^p R^k \pi_ \Omega^\bullet_{\mathcal{X}/S}\Omega^\bullet_{\mathcal{X}/S}$.*
Proof. A local section of is represented by an element of — that is, by a cocycle of degree whose components in are present and components in for vanish. Lifting to and applying , the result lies in as a sum of two pieces: the relative differential (which preserves ) and the connecting morphism that drops the relative bidegree by exactly one because the absolute differential of a relative-degree- form in a base direction produces a -component tensored with a relative-degree- form (the relative differential of the lift). Projecting to kills the part and retains the part, which lies in exactly. Hence .
Theorem (Gauss-Manin connection, full statement). Statement and proof as in the Intermediate-tier Key theorem section.
Proof. The Intermediate-tier proof goes through using the three lemmas above as packaged inputs: relative holomorphic Poincaré lemma (Lemma 1) identifies with topologically; Katz-Oda spectral-sequence construction (Lemma 2) produces as ; the bidegree count of Lemma 3 gives Griffiths transversality. Flatness follows from on the -page. Horizontal sections match the locally-constant sections of the local system because both compute on the absolute / relative complex comparison, and the holomorphic Poincaré lemma identifies the kernel with , which under becomes the local system .
Corollary (regular singularities). Let be a smooth proper morphism extending to a morphism with a smooth compactification and the boundary a normal-crossings divisor over which has at-worst semistable degeneration. Then the Gauss-Manin connection on $R^k \pi_ \Omega^\bullet_{\mathcal{X}/S}D$ in the sense of Deligne 1970.*
Proof. The relative log de Rham complex along the boundary produces a coherent extension of to all of , and the Katz-Oda construction in the log setting produces a connection with regular singularities along . The monodromy theorem of Borel asserts that the local monodromy around each component of acts unipotently on the local-system fibre; quasi-unipotency is the Deligne regularity criterion.
Corollary (Picard-Fuchs equation). Let be a smooth proper morphism with a smooth quasi-projective curve and $\omega \in R^k \pi_ \Omega^\bullet_{\mathcal{X}/S}\omegaS\omega$.*
Proof. The cohomology bundle has finite rank , so the iterated derivatives are sections of a rank- bundle and hence linearly dependent over the function field of . The dependence relation $$ a_r(s) \nabla^r \omega + a_{r - 1}(s) \nabla^{r - 1} \omega + \cdots + a_0(s) \omega = 0 $$ with algebraic functions on is the Picard-Fuchs equation. Periods for locally-constant cycles satisfy the same ODE because is the canonical flat connection of the local system and integration over a horizontal cycle commutes with .
Connections [Master]
Hodge decomposition on a compact Riemann surface
06.04.03. The Hodge filtration on the cohomology bundle of a family of compact Riemann surfaces is the family-version of the curve Hodge decomposition. Each fibre carries the -split of ; varying with , the holomorphic subbundle has rank and the quotient has rank , recovering the curve Hodge identifications uniformly over . Griffiths transversality is the differential constraint that the family Hodge structure satisfies on top of the pointwise decomposition.Serre duality on a curve
06.04.04. The polarisation on the cohomology bundle of a family of Riemann surfaces is the family-version of the Serre-duality pairing , promoted to a perfect pairing of holomorphic subbundles and over via the cup product with values in . Serre duality at the curve level supplies the structural pairing that makes the Gauss-Manin local system polarised in the sense of variation of Hodge structure.Period matrix
06.06.02. For a family of Riemann surfaces, the period matrix extracted at each fibre is the local manifestation of the period mapping associated to the Gauss-Manin connection. The Riemann bilinear relations are pointwise constraints that hold uniformly along ; their preservation along is the polarisation-compatibility of the Gauss-Manin connection.Jacobian variety
06.06.03. The relative Jacobian is a smooth proper morphism over whose fibres are the Jacobians of the curves . The Gauss-Manin connection on produces the tangent-space identification varying with ; the universal family of polarised abelian varieties over the moduli space of curves inherits its complex-analytic structure from this Gauss-Manin data.Holomorphic 1-form
06.06.01. Sections of are families of holomorphic 1-forms on the fibres, varying holomorphically with . The Gauss-Manin derivative of such a section in a base direction produces a non-holomorphic-on-the-fibre class — the Kodaira-Spencer derivative — that is the structural content of Griffiths transversality at .Riemann-Roch theorem for compact Riemann surfaces
06.04.01. Riemann-Roch on each fibre of a smooth proper family of curves gives a fibrewise Euler characteristic; the Gauss-Manin connection promotes the Euler-characteristic decomposition into a family of perfect pairings via Serre duality, producing the variation-of-Hodge-structure refinement of pointwise Riemann-Roch.Holomorphic line bundle on a Riemann surface
06.05.02. Relative line bundles on a family produce variation-of-mixed-Hodge-structure on the cohomology of the line bundle, via the Gauss-Manin connection on for a relative line bundle on . This is the input data for the Kodaira-Spencer deformation theory of a polarised pair over .Sheaf cohomology
04.03.01. The Gauss-Manin connection is constructed via the Katz-Oda spectral sequence on the absolute de Rham complex, a structural application of sheaf cohomology to filtered complexes. The flatness and Griffiths transversality are spectral-sequence-level statements.Hodge decomposition (general)
04.09.01. Variation of Hodge structure is the family-version of the compact-Kähler Hodge decomposition; the Gauss-Manin connection is the structural data that organises the fibrewise decompositions into a single coherent object on the base. The general theory specialises to the curve case at fibre dimension one.Canonical sheaf and Riemann-Roch theorem for curves
04.04.01. The relative canonical sheaf on a family of curves is the load-bearing object on the Hodge-filtration side of the Gauss-Manin connection: . The Picard-Fuchs equation of a section of is the algebraic ODE controlling the variation of holomorphic 1-forms on the fibres.
Historical & philosophical context [Master]
Yuri Manin gave the first explicit treatment of the Gauss-Manin connection in algebraic geometry in his 1958 paper Rational points of algebraic curves over function fields [Manin 1958] (Izv. Akad. Nauk SSSR Ser. Mat. 22, 737-756), constructing what is now called the Gauss-Manin connection on the relative cohomology of a family of curves over a function field and using it to deduce diophantine results about rational points. The classical version traces to two earlier sources: Gauss's 1812 work on the hypergeometric function and its differential equation, which is the Picard-Fuchs equation of the Legendre family of elliptic curves; and the Picard-Fuchs equations of Émile Picard 1889 and Lazarus Fuchs 1880-1890 governing periods of integrals on a one-parameter family of plane curves. The "Gauss" in the modern name commemorates Gauss's hypergeometric ODE; the "Manin" commemorates the algebraic-geometric reframing.
The modern algebraic framework was established by Nicholas Katz and Tadao Oda in 1968 in On the differentiation of de Rham cohomology classes with respect to parameters [Katz-Oda 1968] (J. Math. Kyoto Univ. 8, 199-213). The Katz-Oda construction produces the Gauss-Manin connection on the relative algebraic de Rham cohomology of a smooth proper morphism via the spectral sequence of the filtration of the absolute de Rham complex by powers of the pullback of the base differentials; this is the construction reproduced in the Key theorem section above. Katz subsequently extended the framework to crystalline cohomology and to the -adic setting (Katz 1970 Nilpotent connections and the monodromy theorem, Publ. Math. IHÉS 39); the algebraic Gauss-Manin connection is now standard in algebraic geometry.
The Hodge-theoretic interpretation is due to Phillip Griffiths in 1968-70 in the three-part series Periods of integrals on algebraic manifolds I-III [Griffiths 1968] (Amer. J. Math. 90, 568-626 and 805-865; Publ. Math. IHÉS 38, 125-180). Griffiths introduced the period mapping into the period domain , proved the infinitesimal period relations (Griffiths transversality), and developed the theory of polarised variation of Hodge structure. The transversality condition is the differential-geometric content that distinguishes a variation of Hodge structure from an arbitrary holomorphic family of filtrations.
The degeneration theory was completed by Wilfried Schmid in 1973 Variation of Hodge structure: the singularities of the period mapping (Invent. Math. 22, 211-319) and by Eduardo Cattani, Aroldo Kaplan, and Wilfried Schmid in 1986 Degeneration of Hodge structures [Cattani-Kaplan-Schmid 1986] (Ann. of Math. (2) 123, 457-535), with the nilpotent-orbit theorem and SL-orbit theorem governing the asymptotic behaviour of periods near a degeneration. The mirror-symmetry application was opened by Philip Candelas, Xenia de la Ossa, Paul Green, and Linda Parkes in 1991 A pair of Calabi-Yau manifolds as an exactly soluble superconformal theory [Candelas-de la Ossa-Green-Parkes 1991] (Nuclear Phys. B 359, 21-74), where the Picard-Fuchs equation of the quintic-threefold family was used to predict Gromov-Witten invariants of the mirror; Maxim Kontsevich and Alexander Givental subsequently formulated and proved the mirror conjecture in the late 1990s.
Donaldson's Riemann Surfaces (Oxford GTM 22, 2011) §13 [Donaldson Riemann Surfaces] presents the curve case of the Gauss-Manin connection through the period mapping on Teichmüller space; Voisin's Hodge Theory and Complex Algebraic Geometry I+II (2002-2003) [Voisin Hodge Theory I] §10 develops the modern differential-geometric framework with the curve case as an extended example. Cox-Katz Mirror Symmetry and Algebraic Geometry [Cox-Katz Mirror Symmetry] is the standard reference for the Calabi-Yau Picard-Fuchs and mirror-symmetry calculations.